Metabolic Networks

publications

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A deep network-based model of hippocampal memory functions under normal and Alzheimer’s disease conditions

Kanagamani Tamizharasan, Chakravarthy V.Srinivasa, Ravindran Balaraman, Menon Ramshekhar N,

To appear in the proceedings of the Frontiers in Neural Circuits

https://doi.org/10.3389/fncir.2023.1092933
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MinReact: a systematic approach for identifying minimal metabolic networks

Gayathri Sambamoorthy, Karthik Raman,

Bioinformatics

https://doi.org/10.1093/bioinformatics/btaa497
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MINREACT: an efficient algorithm for identifying minimal metabolic networks

Gayathri Sambamoorthy, Karthik Raman,

bioRxiv

https://doi.org/10.1101/2020.01.06.896084
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Computational Prediction of Synthetic Lethals in Genome-Scale Metabolic Models Using Fast-SL

Karthik Raman, Aditya Pratapa, Omkar Mohite, Shankar Balachandran,

Metabolic Network Reconstruction and Modeling

https://doi.org/10.1007/978-1-4939-7528-0_14
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Understanding the evolution of functional redundancy in metabolic networks

Gayathri Sambamoorthy, Karthik Raman,

Bioinformatics

https://doi.org/10.1093/bioinformatics/bty604
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Enumerating all possible biosynthetic pathways in metabolic networks

Aarthi Ravikrishnan, Meghana Nasre, Karthik Raman,

Scientific reports

https://doi.org/10.1038/s41598-018-28007-7
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Network-based features enable prediction of essential genes across diverse organisms

Karthik Azhagesan, B Ravindran, Karthik Raman,

PloS one

https://doi.org/10.1371/journal.pone.0208722
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In Silico Approaches to Metabolic Engineering

A Badri, A Srinivasan, Karthik Raman,

Current Developments in Biotechnology and Bioengineering

https://doi.org/10.1016%2fB978-0-444-63667-6.00008-0
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Fast-SL:an efficient algorithm to identify synthetic lethal sets in metabolic networks

A. Pratapa, S. Balachandran, K. Raman",

Bioinformatics

https://doi.org/10.1093/bioinformatics/btv352